Uncurated Protocols Library
OverviewThe collection of protocols that have not yet been curated by IBISBA WP6
Programme: IBISBA
SEEK ID: https://ibisbahub.eu/projects/2
Public web page: http://www.ibisba.eu
Organisms: Pseudomonas putida, Saccharomyces cerevisiae, Escherichia coli, Komagataella (aka pichia) pastoris
IBISBA PALs: No PALs for this Project
Project created: 30th May 2018
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Projects: Uncurated Protocols Library, TRANSCRIPTPROM - Integrative and comparative analyses of response of Pichia pastoris, FLOX: FLavin-containing OXidoreductases, PlanOvac, Muconic Acid Production, HIGHFLUX, Promoters 4 Pichia, An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data, Template library, Evocolour - The evolution and genetics of Flavobacteria forming structurally coloured colonies for sustainable biomaterials, Extreme - Genomic approach for extremozymes screening of thermophilic/anaerobic Caldicoprobacter algerensis strain, HMOzyme, PILOT-MP - Pilot scale process development for microbial proteins, UMB - Upscaling and optimisation of microalgae production for bivalves hatchery, Public announcements and documents, IBISBA Library, Biocare, MEOX, Coculture, YarroFuels, PlasticPutida, Lipro-alga, Curated Protocols Library, IBISBA 1.0 deliverables, PREP-IBISBA deliverables, Cyanofcs, Example testing project
Institutions: Administration, UNIMAN - The University of Manchester
Projects: Uncurated Protocols Library
Institutions: CSIC - Agencia Estatal Consejo Superior de Investigaciones Cientificas
Projects: Uncurated Protocols Library, MEOX
Institutions: UAB - Universitat Autònoma de Barcelona
https://orcid.org/0000-0002-2924-8902
Associated Professor Department of Chemical, Biological and Environmental Engineering Engineering School Universitat Autònoma de Barcelona (UAB)
Projects: Uncurated Protocols Library, FLOX: FLavin-containing OXidoreductases, PlanOvac, HIGHFLUX, SporeDel, Yeast Glycerol, Galambr, SULFOCEL, An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data, Template library, Muconic Acid Production in Yeast, IBISBA 1.0 deliverables, PREP-IBISBA deliverables, Biocare, test, DBTL-P, Upscale of the biocatalytic transformation of Free Fatty Acids into high-value products (BIOFFA), B-PAC, BIOFFA, GLYCOMICS, KorallionBio, MAROX, PROTEIFROM, SUPI
Institutions: UNIMAN - The University of Manchester, UAB - Universitat Autònoma de Barcelona, CNR - Consiglio Nazionale delle Ricerche, INSAT - Institut National des Science Appliquees de Toulouse, VTT - Teknologian tutkimuskeskus VTT Oy, VITO - Vlaamse Instelling voor Technologisch Onderzoek N.V.
IBISBA is designed to accelerate end-to-end bioprocess development, linking best-in-class R&D facilities to provide seamless multi-technology services.
Focusing on the different R&D phases in bioprocess development, IBISBA offers services related to computer-assisted design of biocomponents, construction of enzymes and microbial strains, the fermentation, downstream processing and project knowledge asset management.
Projects: Uncurated Protocols Library, Template library, Muconic Acid Production in Yeast, Public announcements and documents, IBISBA Library, Curated Protocols Library, Test, DBTL-P, test, Sandbox, kHub_Test_2024
Web page: http://www.ibisba.eu
This is a Protocol for transforming plasmid DNA into P. putida cells by electroporation. This is a fast and easy-to-use method of introducing plasmid DNA in P. putida cells with high transformation efficiency. This Protocol is adapted from [1] and encompasses the steps for the preparation of competent cells and transformation of plasmid DNA by electroporation.
All Inputs of the Protocol, listed in the section 4.1., can be acquired either from other IBISBA Protocols or purchased from commercial ...
Creator: Rita Volkers
Submitter: Rita Volkers
Creator: Rita Volkers
Submitter: Rita Volkers
Creator: Rita Volkers
Submitter: Rita Volkers
Creator: Rita Volkers
Submitter: Rita Volkers
Creator: Rita Volkers
Submitter: Rita Volkers
Abstract
Authors: Melchior du Lac, Thomas Duigou, Joan Hérisson, Pablo Carbonell, Neil Swainston, Valentin Zulkower, Forum Shah, Léon Faure, Mostafa Mahdy, Paul Soudier, Jean-Loup Faulon
Date Published: 15th Jun 2020
Publication Type: Journal
Abstract (Expand)
Authors: T. Duigou, M. du Lac, P. Carbonell, J. L. Faulon
Date Published: No date defined
Publication Type: Not specified
Abstract (Expand)
Authors: B. Delepine, T. Duigou, P. Carbonell, J. L. Faulon
Date Published: No date defined
Publication Type: Not specified
This meeting brought together ministerial level representatives from 7 European member states to appraise and discuss progress towards launching IBISBA.
Country: 
France
City: Not specified
This reprot describes achievements so far regarding the construction of IBISBA, a European distributed initiative that aims to provide a world-class infrastructure, enabling cutting-edge research and supporting the development of biotechnology towards a circular economy.
The report was prepared as a support docuement for the 1st Steering Committee meeting that took place online on the 17th June 2021. The document reports progress and provides some indications of next steps in the conception and ...
Creators: Michael O'Donohue, Mauro Di Fenza
Submitter: Michael O'Donohue
DownloadThis document constitutes deliverable 4.4 of the IBISBA 1.0 project. IBISBA 1.0 receives funding from the EU H2020 research and innovation programme under grant agreement No 730976.
Creators: Michael O'Donohue, Julieta Cabello; Laurie Rey; Olivier Rolland
Submitter: Michael O'Donohue
A vision paper describing the founding principles behind IBISBA
Design plasmids encoding predicted pathways by using the BASIC assembly method.
Given one or a collection of heterolgous pathways in SBML files, generate the SBOL for the constructs and the assembly protocols to build them
Given a collection of SBML files with the heterologous pathways, calculate the FBA and the Gibbs free energy of the pathways.
Perform retrosynthesis using RetroPath2.0 and convert the heterologous pathways to SBML files
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