DBTL-P

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No description specified

Programme: IBISBA

SEEK ID: https://ibisbahub.eu/projects/56

Public web page: Not specified

Organisms: No Organisms specified

IBISBA PALs: No PALs for this Project

Project created: 16th Dec 2020

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Munazah Andrabi

Projects: Uncurated Protocols Library, FLOX: FLavin-containing OXidoreductases, PlanOvac, HIGHFLUX, SporeDel, Yeast Glycerol, Galambr, SULFOCEL, An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data, Template library, Muconic Acid Production in Yeast, IBISBA 1.0 deliverables, PREP-IBISBA deliverables, Biocare, test, DBTL-P, Upscale of the biocatalytic transformation of Free Fatty Acids into high-value products (BIOFFA), B-PAC, BIOFFA, GLYCOMICS, KorallionBio, MAROX, PROTEIFROM, SUPI

Institutions: UNIMAN - The University of Manchester, UAB - Universitat Autònoma de Barcelona, CNR - Consiglio Nazionale delle Ricerche, INSAT - Institut National des Science Appliquees de Toulouse, VTT - Teknologian tutkimuskeskus VTT Oy, VITO - Vlaamse Instelling voor Technologisch Onderzoek N.V.

ANTONIS KOKOSSIS

Projects: Uncurated Protocols Library, DBTL-P, Test

Institutions: NTUA - National Technical University of Athens

Expertise: Process design, Process development, Downstream Processing, Scale-up, Process integration

Tools: Modeling, Optimization, machine learning

Konstantinos Pyrgakis

Projects: Uncurated Protocols Library, DBTL-P, Test

Institutions: NTUA - National Technical University of Athens

https://orcid.org/0000-0002-0670-9630

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IBISBA is designed to accelerate end-to-end bioprocess development, linking best-in-class R&D facilities to provide seamless multi-technology services.

Focusing on the different R&D phases in bioprocess development, IBISBA offers services related to computer-assisted design of biocomponents, construction of enzymes and microbial strains, the fermentation, downstream processing and project knowledge asset management.

Projects: Uncurated Protocols Library, Template library, Muconic Acid Production in Yeast, Public announcements and documents, IBISBA Library, Curated Protocols Library, Test, DBTL-P, test, Sandbox

Web page: http://www.ibisba.eu

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NTUA - National Technical University of Athens

Country: Greece

City: Athens

Web page: https://www.ntua.gr

UNIMAN - The University of Manchester

Country: United Kingdom

City: Manchester

Web page: http://www.manchester.ac.uk/

Advanced Investigations list for this Project with search and filtering

Bioprocess design

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Studies: Bioprocess Integration, Bioprocess synthesis

Assays: Downstream processing, Energy integration, Material and water integration, Upstream operations

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Bioprocess analysis

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Studies: Life-Cycle Analysis, Techno-Economic Analysis

Assays: No Assays

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Computational strain design

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Studies: Computational strain optimization

Assays: Computationally choose genome regions to delete, Pathway improvement by mutations

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Data processing

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Studies: Calculation of process variables

Assays: Calculate process variables

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Create/Update model

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Studies: Bioprocess modeling

Assays: Conceptual and unit and process representation, Data collection on mass and energy balances, chemical and physical equil..., Modeling of unit processes (reactions, separations recycles), Process flowsheeting (process integration and recycles), Superstructure modeling and optimization

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Showing 5 out of a possible 7 Studies Advanced Studies list for this Project with search and filtering

Bioprocess modeling

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Investigation: Create/Update model

Assays: Conceptual and unit and process representation, Data collection on mass and energy balances, chemical and physical equil..., Modeling of unit processes (reactions, separations recycles), Process flowsheeting (process integration and recycles), Superstructure modeling and optimization

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Bioprocess synthesis

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Investigation: Bioprocess design

Assays: Downstream processing, Upstream operations

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Bioprocess Integration

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Investigation: Bioprocess design

Assays: Energy integration, Material and water integration

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Techno-Economic Analysis

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Investigation: Bioprocess analysis

Assays: No Assays

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Life-Cycle Analysis

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Investigation: Bioprocess analysis

Assays: No Assays

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

View all 7 Studies

Showing 5 out of a possible 12 Assays Advanced Assays list for this Project with search and filtering

Pathway improvement by mutations

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Computational strain design

Study: Computational strain optimization

Organisms: No organisms

SOPs: Optimal Synthesis of Pathways – II

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43, Last updated: 10th Feb 2022 at 11:12

Calculate process variables

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Data processing

Study: Calculation of process variables

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Conceptual and unit and process representation

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Create/Update model

Study: Bioprocess modeling

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Upstream operations

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Bioprocess design

Study: Bioprocess synthesis

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

Energy integration

DBTL-P

No description specified

Submitter: Konstantinos Pyrgakis

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Bioprocess design

Study: Bioprocess Integration

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 16th Dec 2020 at 15:43

View all 12 Assays

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TEMPLATE FOR LEARN

DBTL-P

Template to collect input data for LEARN step

Creator: Konstantinos Pyrgakis

Submitter: Konstantinos Pyrgakis

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Created: 16th Dec 2020 at 16:07

Execution of a LEARN step

DBTL-P

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Execution of a LEARN step: The case of growth coupled production hydrocarbons using S. cerevisiae

Creators: Konstantinos Pyrgakis, Ioannis Ntekas, ANTONIS KOKOSSIS

Submitter: Konstantinos Pyrgakis

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Created: 16th Dec 2020 at 16:03

DBTL-P

No description specified

Creator: Konstantinos Pyrgakis

Submitter: Konstantinos Pyrgakis

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Created: 16th Dec 2020 at 15:42, Last updated: 16th Dec 2020 at 15:52

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TEMPLATE FOR LEARN

DBTL-P

Template to collect input data for execution of LEARN step

Creator: Konstantinos Pyrgakis

Submitter: Konstantinos Pyrgakis

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Created: 16th Dec 2020 at 16:06

Optimal Synthesis of Pathways – III

DBTL-P

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Scale-up

Creators: Konstantinos Pyrgakis, Ioannis Ntekas, ANTONIS KOKOSSIS

Submitter: Konstantinos Pyrgakis

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Created: 16th Dec 2020 at 16:01

Optimal Synthesis of Pathways – II

DBTL-P

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Pathways elimination

Creators: Konstantinos Pyrgakis, Ioannis Ntekas, ANTONIS KOKOSSIS

Submitter: Konstantinos Pyrgakis

Investigations: Computational strain design

Studies: Computational strain optimization

Assays: Pathway improvement by mutations

Created: 16th Dec 2020 at 16:00

Optimal Synthesis of Pathways – I

DBTL-P

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GEM preparation

Creators: Konstantinos Pyrgakis, Ioannis Ntekas, ANTONIS KOKOSSIS

Submitter: Konstantinos Pyrgakis

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Created: 16th Dec 2020 at 15:56

(v.1.14.2)

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