Genetic Design
Version 2

Download RO-Crate
Workflow Type: Galaxy

Given one or a collection of heterolgous pathways in SBML files, generate the SBOL for the constructs and the assembly protocols to build them

SEEK ID: https://ibisbahub.eu/workflows/17?version=2

Inputs

ID Name Description Type
GEM SBML GEM SBML n/a
  • File
List of genetic parts List of genetic parts n/a
  • File
Max (UNIPROT) enzymes per reactions Max (UNIPROT) enzymes per reactions n/a
  • int
Top pathways to convert to SBOL Top pathways to convert to SBOL n/a
  • int
rpSBML TAR rpSBML TAR n/a
  • File

Steps

ID Name Description
5 Extract Taxonomy extractTaxonomy
6 Selenzyme rpSelenzyme
7 SBML to SBOL rpSBMLtoSBOL
8 Parts Genie PartsGenie
9 OptDoE rpOptBioDes
10 DNA Weaver DNAWeaver
11 LCR Genie LCRGenie

Outputs

ID Name Description Type
_anonymous_output_6 _anonymous_output_6 n/a
  • File
_anonymous_output_7 _anonymous_output_7 n/a
  • File
_anonymous_output_8 _anonymous_output_8 n/a
  • File
Pathway SBOLs Pathway SBOLs n/a
  • File
_anonymous_output_9 _anonymous_output_9 n/a
  • File
_anonymous_output_10 _anonymous_output_10 n/a
  • File

Version History

Version 2 (latest) Created 30th Jul 2021 at 19:01 by Melchior du Lac

No revision comments

help Creators and Submitter
Creator
Submitter
License
Creative Commons Attribution 4.0 International
Activity

Views: 2987   Downloads: 570

Created: 28th Jun 2020 at 13:38

Last updated: 30th Jul 2021 at 19:01

help Tags

This item has not yet been tagged.

help Attributions

None

Powered by
 (v.1.16.2)
About IBISBA | About IBISBA Knowledge Hub | Funding and Programmes | Credits | Terms & Conditions
Copyright © 2008 - 2024 The University of Manchester and HITS gGmbH
IBISBA is a pan-European research infrastructure that is currently funded by the EU Horizon 2020 projects
IBISBA 1.0 (grant agreement number 730976) and PREP-IBISBA (grant agreement number 871118).
Registering data or other knowledge assets on this platform is the sole responsibility of Users.
IBISBA cannot be held responsible for misuse or misappropriation of data and assets belonging to a Third Party..