Model Identification
The model is a CUBIST (version V.1.0) with the ID 0003[R]penicillinCUBIST. Its authors are Acosta-Pavas, J. C., Robles-Rodriguez, C. E., Griol, D., Daboussi, F., Aceves-Lara, C. A., & Corrales, D. C., and it is associated with the publication available at the DOI link: https://doi.org/10.1016/j.compchemeng.2024.108736 The model was created on 22-01-2024, belongs to a project described in Industrial-scale penicillin simulation, and its current status is online, meaning it is loaded and ready to generate predictions.
Model Description
The model uses a CUBIST learner and is classified as interpretable. It is implemented in R 4.3.3, and the corresponding model file is 0003_[R]_penicillin_CUBIST.rds.
The implementation relies on:
- Package: Cubist
- Version: 0.4.4
Model summary: The Cubist learner is an advanced version of M5 that explores nonlinear relationships in observed data
Input Time Interval:
- One measurement is expected every 12 minutes.
- No aggregation method is applied (set to "NaN").
Training Information
The training dataset contains 89,800 instances.
Hyperparameters used:
- Minimum number of instances per leaf: 12,000
- Number of committees: 1
- Instance-based corrections: 3
The model was validated using 10-fold cross-validation with 3 repetitions. It was trained using experiments with the following IDs: [1, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 17, 19, 20, 21, 22, 24, 25, 26, 27, 29, 30, 31, 33, 34, 36, 37, 38, 39, 40, 42, 43, 44, 45, 47, 48, 49, 50, 51, 53, 54, 55, 56, 57, 58, 59, 61, 62, 65, 66, 67, 69, 70, 71, 72, 73, 74, 75, 76, 77, 80, 81, 82, 83, 84, 85, 87, 88, 89, 90, 92, 93, 94, 95, 96, 97, 98, 99].
Model Inputs
The model receives a set of sensor measurements, actuator settings, and computed variables, each with defined units, expected ranges, and no feature scaling applied.
Features
| Name | Type | Description | Units | Lag | Scaling | Expected Min | Expected Max |
|---|---|---|---|---|---|---|---|
| temperature | Sensor | Current temperature (T) in the bioreactor | K | 0 | none | 298 | 308 |
| pH | Sensor | Current pH level in the bioreactor | pH | 0 | none | 5.5 | 7.5 |
| dissolved_oxygen_concentration | Sensor | Dissolved oxygen (DO) concentration | mg/L | 0 | none | 0 | 10 |
| agitator | Actuator | Agitation speed (rpm) | rpm | 0 | none | 100 | 1200 |
| CO2_percent_in_off_gas | Sensor | CO₂ percentage in off-gas (CO₂,og) | % | 0 | none | 0 | 10 |
| oxygen_in_percent_in_off_gas | Sensor | O₂ percentage in off-gas (O₂,og) | % | 0 | none | 10 | 21 |
| vessel_volume | Computed variable | Total vessel volume (V) | L | 0 | none | 1 | 1000 |
| sugar_feed_rate | Actuator | Sugar feed rate (Fs) into the bioreactor | L/h | 0 | none | 0 | 2 |
Model Output
The model predicts:
| Name | Description | Units | Forecast Horizon | Scaling | Expected Min | Expected Max |
|---|---|---|---|---|---|---|
| penicillin_concentration | Prediction of the penicillin concentration | g L⁻¹ | 0 | none | 0 | 50 |
SEEK ID: https://ibisbahub.eu/models/25?version=1
1 item (and an image) are associated with this Model:- 0003_[R]_penicillin_CUBIST.rds (Gzip archive - 1.58 MB)
Organism: Penicillium chrysogenum
Model type: AI/ML
Model format: R code
Execution or visualisation environment: R
Model image: (Click on the image to zoom) (Original)
Creators and SubmitterCreator
Submitter
Views: 66 Downloads: 1
Created: 15th Dec 2025 at 10:27
Last updated: 15th Dec 2025 at 12:00
AttributionsNone
Version History
Version 2 (latest) Created 15th Dec 2025 at 11:15 by David Camilo Corrales
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Version 1 (earliest) Created 15th Dec 2025 at 10:27 by David Camilo Corrales
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https://orcid.org/0000-0003-4717-3040