Projects

The ecological niche occupied by a fungal species, its pathogenicity and its usefulness as a microbial cell factory to a large degree depends on its secretome. Protein secretion usually requires the presence of a N- terminal signal peptide (SP) and by scanning for this feature using available highly accurate SP-prediction tools, the fraction of potentially secreted proteins can be directly predicted. However, prediction of a SP does not guarantee that the protein is actually secreted and current ...

Bioindustry4.0 Work Package 7: Tools for high-quality datasets, requisite for data-driven methods and services

Real-time online monitoring of bioprocesses

Industrial biotechnology (IB) has the potential to create new markets while protecting the environment. With this in mind, the EU-funded BIOINDUSTRY 4.0 project will pave the way for IB to become a major manufacturing technology. Supporting the digitalisation of IB, the project will create new services delivered by European research ...

Project: Systems Biology, Artificial Intelligence and Advanced BiOtechnology Approaches to Improve Soil BioREMediation (BIOREM)

Harnessing microbes to clean up pollution

Hazardous compounds, including persistent organic pollutants, increasingly endanger ecosystems and human health. While natural recovery processes do exist, leveraging biological agents such as plants and microorganisms could provide cost-effective and sustainable clean-up solutions. Supported by the Marie Skłodowska-Curie ...

Co-Culture for improved lignocellulose fractionation and elicitation of enzymatic activies - Omics on co-culture of trichoderma reesei or Phanerochaete chrysosporium

A collection of protocols that have been curated and validated

Hybrid Physics-Informed Neural Networks for Efficient Computational Modeling: A Workflow Framework Applied to Schwanniomyces occidentalis

This project collects together the IBISBA 1.0 deliverables

IBISBA-DIALS: IBISBA - Delivering the Infrastructure As a Legal Structure

A solution to industrial biotechnology's barriers

In the quest for sustainable, circular economies, industrial biotechnology is a game-changer. However, unlocking its full potential hinges on addressing complex challenges and streamlining research and innovation (R&I). In this context, the EU-funded IBISBA-DIALS project aims to reshape the R&I landscape by establishing a European Research Infrastructure ...

Industrial-scale penicillin simulation

Industrial-scale penicillin simulation (IndPenSim) is a first principles mathematical model of a 100,000 Litre fermentation of an industrial strain of Penicillium chrysogenum validated using historical data collected from an industrial-scale penicillin fermentation process. Adapting a previously published structured model to describe penicillin fermentation and extending the model to include the main environmental effects of dissolved oxygen, ...

Construction of a P. putida KT2440 producing cis,cis-muconate from glucose, benzoate, or p-coumarate

This project make available the deliverables of the PREP-IBISBA project

A sandbox project to experiment in.

A project for templates for templates for data, protocols etc. and for their documentation and examples.

The collection of protocols that have not yet been curated by IBISBA WP6