Projects

The ecological niche occupied by a fungal species, its pathogenicity and its usefulness as a microbial cell factory to a large degree depends on its secretome. Protein secretion usually requires the presence of a N- terminal signal peptide (SP) and by scanning for this feature using available highly accurate SP-prediction tools, the fraction of potentially secreted proteins can be directly predicted. However, prediction of a SP does not guarantee that the protein is actually secreted and current ...

Bioindustry4.0 Work Package 7: Tools for high-quality datasets, requisite for data-driven methods and services

Real-time online monitoring of bioprocesses

Industrial biotechnology (IB) has the potential to create new markets while protecting the environment. With this in mind, the EU-funded BIOINDUSTRY 4.0 project will pave the way for IB to become a major manufacturing technology. Supporting the digitalisation of IB, the project will create new services delivered by European research ...

Co-Culture for improved lignocellulose fractionation and elicitation of enzymatic activies - Omics on co-culture of trichoderma reesei or Phanerochaete chrysosporium

This project collects together the IBISBA 1.0 deliverables

IBISBA-DIALS: IBISBA - Delivering the Infrastructure As a Legal Structure

A solution to industrial biotechnology's barriers

In the quest for sustainable, circular economies, industrial biotechnology is a game-changer. However, unlocking its full potential hinges on addressing complex challenges and streamlining research and innovation (R&I). In this context, the EU-funded IBISBA-DIALS project aims to reshape the R&I landscape by establishing a European Research Infrastructure ...

Industrial-scale penicillin simulation

Industrial-scale penicillin simulation (IndPenSim) is a first principles mathematical model of a 100,000 Litre fermentation of an industrial strain of Penicillium chrysogenum validated using historical data collected from an industrial-scale penicillin fermentation process. Adapting a previously published structured model to describe penicillin fermentation and extending the model to include the main environmental effects of dissolved oxygen, ...

Construction of a P. putida KT2440 producing cis,cis-muconate from glucose, benzoate, or p-coumarate

This project make available the deliverables of the PREP-IBISBA project

A sandbox project to experiment in.

A project for templates for templates for data, protocols etc. and for their documentation and examples.

The collection of protocols that have not yet been curated by IBISBA WP6