Data files

Execution of a LEARN step: The case of growth coupled production hydrocarbons using S. cerevisiae

This is the template that can be used to populate your project using the IBISBA Populator software that is part of the IBISBA Hub. More information can be found here https://ibisba.github.io/handbook/ibisba_hub/project/

The monitor_and_extract_metadata.py script is designed to monitor a specified parent folder for new subfolders containing a Result.xml file. It extracts selected metadata from the Result.xml file and saves this metadata in both JSON and XML formats within the same subfolder.

This is an example of workflow run with target muconic acid. The results is a tar with a collection of SBML, fused with GEM SBML model (yeast in this case)

Template to collect input data for LEARN step

The unlock metadata template using a modified version of the ISA structure.

This is superseded by https://hub.ibisba.eu/file_templates/1